Not sure the best way to save custom plugin data

Doing my first plugin with 3.1 Everything is great, but I need to store the data now. My data is sufficiently complex that it requires custom tables (as opposed to options). So now I am wondering how I save the data. Normally, I would just create a processing page to handle it, but that doesn’t seem like the best way within the WP API. How do I go about saving my form data from my plugin settings page into my custom tables? Thanks!

EDIT: To clarify, I know how to code it, I am not sure architecturally the best way to do it.

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