WordPress functions not working

I’m trying to customize a HTML5 Boilerplate WordPress theme to develop my own theme, but I can’t get any functions to work: my index.php file starts with

<!DOCTYPE html>
<!--[if lt IE 7 ]> <html <?php language_attributes(); ?> class="no-js ie6"> <![endif]-->

But when I view source, the document ends with <html. It doesn’t generate a fatal error (“Fatal error: Call to undefined function get_header() in /home/micha162/public_html/index.php on line 1“), as it would on a server without WordPress installed. I’ve included all the required WordPress files and I can log into wp-admin just fine. I’m storing it on a subfolder but I’ve redirected the Site Address to the root folder, where index.php and header.php are installed. What could be going wrong?

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